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While the average emulation quality of its default emulators is relatively high, the FunKey S cannot emulate several games out of the box for a variety of reasons. These include incompatible controls, unemulated specialty hardware, and emulation imperfections, among others. A list of all the games known to be incompatible with the device's default emulators is located here. Many of these games, however, can still be played via one of the several third-party emulators available for the device. This includes multi-disk PlayStation games, which while not fully-playable in the default version of PCSX-ReARMed, are fully-playable in the third-party version that has disk-swapping functionality enabled. As an illustration of the device's capabilities, a table of estimated compatibility rates for each officially emulated system has been compiled below. For the purposes of these counts, a game is counted as incompatible if it cannot be played to completion using solely the FunKey S. As wiki contributors have conducted extensive research and game testing to find incompatible games, all compatibility rates listed here are believed to be accurate or very near accurate. In cases where all of a system's incompatibilities are due to unemulated hardware, that system's compatibility rate is italicized. While the emulation of Famicom Disk System and TurboGrafx-CD games on the FunKey S is functional via the addition of their respective BIOS files, as this functionality has not yet been fully-implemented into FunKey-OS, the compatibility rates of those console add-ons are excluded from the table below. As homebrew games can have varying compatibility with the systems they are developed for, their compatibility is also not reflected in the table below. Note that due to its extensive game library, the PlayStation's Licensed Games figure is simply an estimate calculated by the wiki editors, though should be accurate to within roughly one hundred games in either direction.

System	Licensed Games	Known Incompatibilities	Estimated Compatibility Rate
NES / Famicom	1421	9	99.37%
Sega Master System	360	14	96.11%
TurboGrafx-16 / PC Engine	413	0	100%
Genesis / Mega Drive / CD / 32X	1123	0	100%
Game Boy	1046	6	99.43%
Atari Lynx	76	0	100%
Game Gear	364	10	97.25%
SNES / Super Famicom	1757	32	98.18%
PlayStation	4750	102	97.85%
Game Boy Color	915	10	98.91%
Neo Geo Pocket / Neo Geo Pocket Color	92	0	100%
WonderSwan / WonderSwan Color	199	5	97.49%
Game Boy Advance	1536	138	91.02%
Total	14052	326	97.68%